Intramolecular Triplex Dna

Intramolecular Triplex Dna

  When a Pu·Py tract exists that has mirror repeat symmetry (5′ GAAGAG-GAGAAG 3′), an intramolecular triplex can form, in which half of the Pu.Py tract unwinds and one strand wraps into the major groove, forming a triplex. The structure in Figure 4 shows the pyrimidine strand (CTT) pairing with the purine strand (GAA) of a canonical DNA duplex. In an intramolecular triplex, one strand of the unwound region remains unpaired, as shown.